It ends up that Hyper-V machines include additional objects to each computer account that you can't see through Active Directory Users and Computers. I haven't looked any further into this since I don't currently have the time, but for anyone wondering, yes it's safe to click yes on this pop-up box.
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I ran into this today and had never seen it before either. I went into ADSI Edit and found that there were 2 containers under this computer. In my case both were printers. I deleted both of the CN=[PRINTERNAME], then went back into ADUC and was able to delete the account without issue.
Just an F.Y.I.
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